PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG604600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 225aa    MW: 23746.8 Da    PI: 6.5025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG604600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1070110954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  Pavir.5KG604600.1.p  70 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 110
                          699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.31361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1466126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-1467115No hitNo description
SMARTSM003536.3E-1367116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1267121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-770110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEPYHYQAVY DPRGFPMIHP QPYRHHPAAA GGALSDRVRG GGGGGGGGGG GGGRRRPGAK  60
LSTDPQSVAA RERRHRISDR FRVLRSLVPG GSKMDTVSML EQAIHYVKFL KAQVSLHQAA  120
LMQHEEGCPA ELAAAYSAVA GAGEVTLASS CRAGACEEVV MQLQQDPLQE AMSYDVVGAP  180
RLHGLDPVPQ MSGGHELPPL PSCVFVEEPA ACYSVCDLDE GESY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13853RGGGGGGGGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8860282e-99AY886028.1 Oryza rufipogon isolate LAX29 LAX gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970450.11e-102PREDICTED: transcription factor LAX PANICLE-like
SwissprotQ7XAQ66e-60LAX_ORYSJ; Transcription factor LAX PANICLE
TrEMBLK3XRH81e-102K3XRH8_SETIT; Uncharacterized protein
STRINGSi004520m1e-102(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.19e-27APRATAXIN-like